Web servers

We have been involved in making web servers for applications in bioinformatics. These include prediction servers as well as various tools for biological sequence analysis. The corresponding software packages are also available for many of the web pages listed below.

	FOLDALIGN 2.0 - Pairwise local structural alignment of RNA sequences. FOLDALIGN (1.0) Local structural alignment of RNA sequences. SLASH - Stem-Loop Align SearcH. Combining FOLDALIGN and COVE.
	The RK Page - Computing the K category correlation coefficient.
	rnadbtool - Semi-automated update and cleanup of structural RNA databases.
	MatrixPlot - Visualize sequence and structure constraints.
	distanceP - Protein distance constraint predictions.
	CPHmodels 1.0 - Protein structure from sequence using protein distance constraint predictions.
	RNA Structure Logos - Visualize the information content of DNA and RNA sequence and structure alignment.
	Protein Logos - Visualize the information content of protein sequence alignments.

Software

Packages with software and documentation only.

SARSE - Semi-Automated RNA Sequence Editor. [Under construction. Introduction available.]