Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
hsa-mir-224      A-GAUAAGGCC-CAG--GGGCUUUCAAGUCACU-A-GUGGUUCCGUUU-AGUA--GAUGA
hsa-mir-340      ACCGUUUG-UA-CCU--GGUGUGAU-UAUAAA--G-C-AAUGAGACU--GAUUGUCAUAU
hsa-mir-370      A--GUCGG-GGCACA--AGACAGAGAAGCCAGGU----CACGUCUCUG-CAGUUACA-CA
hsa-mir-708      GUGAAAUG-GU-AAC--UGCCCUCA--AGGAGCUUAC-AAUCUAGCUGGGGGUAAAU-GA
hsa-mir-887      G---AGAG-CC-CCGGGGUGCAGAU--CCUUGG-G---AGCCCU-GUU-AGACUCUGGAU
CONS STRUCTURE   .......(.((.(((..(((((............(.....((((((((...((.(((.(.

hsa-mir-224      -UUGUGCAUUGUUUCAAAAUGGUG-CCCUAGUGACU-ACAAAGCCCCAGAGCC-----
hsa-mir-340      GUCGUUUGUGG-G-AUCCGUCUCA-GUUACUUUAUA-GCC-AUACCUGGUAUC-UUAU
hsa-mir-370      GCUCACGAGUGCC-UGCUGGGGUG---GAACCUGGUCUGUCUGUCU-GUCUAA-CACC
hsa-mir-708      CUUGCAC-AUGAA-CACAACUAGACUGUGAGCUUC--UAGAGGGCAGGGACCU-----
hsa-mir-887      UUUACACUUGGAG-UGA-ACGGGCGCCAUCCCGAGG-CU-UUGCACAGGGGCAAGCUU
CONS STRUCTURE   ......).))).).).))))))))....)............)))))))))))......



Consensus
CPU time: 0.00
Average sequence ID: 0.246363636364
Average free energy: -10.206
Average covariation: 0.419230769231
Average basepair probability: 0.656621010987
Canonical basepairs: NA

Sequence and structure consensus for Consensus
RySRWAWGgSCcMMGggGGGCWKAUaWRYCAGSuRaSuARYSYCRCUKgRRKUWMCAKRWSUUGYACAUKGMGuYRMMRYGGKRsCCUWM SYKASWcUCMMWGCCCMGGAGCMaBHHY
.......(.((.(((..(((((............(.....((((((((...((.(((.(.......).))).).).))))))))....). ...........)))))))))))......

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
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