Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
hsa-mir-130a     -------UGCUG-CUGGCCAGAGCUCUUUUC---ACAUUGUGCU--A-CUGUC---UGCA
hsa-mir-19b-1    CU--GAACACUG---UUCUAUGGUUAGUUUUGCAGGUUUGCAUC----CAGC----UGUG
hsa-mir-19b-2    A----GACAUUG-CUACUUACAAUUAGUUUUGCAGGUUUGCAUU---UCAGCGUA-UAUA
hsa-mir-29b-1    UC--AUAAAGCUUCUUCAGGAAGCUGGUUUCA-UAUGGUGGUUU---A--GA-U--UUAA
hsa-mir-29b-2    AG--AUCCUCU-UCUUCUGGAAGCUGGUUUCA---CAUGGUGGCUUAG--AU-UU-UUCC
hsa-mir-504      UUGAAUCAGCUG-----CUGUUGGGAGACCCU-G-GUCUGCACUC-UA--UC-UGUAUUC
hsa-mir-551a     G----GGGACUG-CCGGGUGACCCUGGAAAUC-CAGAGUGGGUGGGGCCAGUC---UG-A
hsa-mir-599      CA--AAGACAUGC-UGUCCACAGUGUGUUUGA-UAAGCUGACAUGGGA--CA-GGGAU-U
CONS STRUCTURE   ..............................................(.............

hsa-mir-130a     CCUGUCACUAGCAGUGCAAUG-U----UAAAAGGGCAUUGG--CCGUGUAGUGCUAC-CC
hsa-mir-19b-1    UG-AUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGG--------UA-GUGAA-A-
hsa-mir-19b-2    UGUAUAUGUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGA--------UA-A-------
hsa-mir-29b-1    AUAGU-GAUUGUCUAGCACCA-U--UUGAAAUCAGUGUUCU-UGGGG-G-A-G---ACC-
hsa-mir-29b-2    AUCUUUGUAUCUAGCACCAUU-----UGAAAUCAGUGUUUU-AGGAGUA-A-G--AA---
hsa-mir-504      UUACU-GAAGGGAGUGCAGGG---C-AGGGUUUCCCAUACAGAGGGCAC-A-G---AC--
hsa-mir-551a     CCGUUUCUAGGCGACCCACUC-UUG--GUUUCCAGGGUUGC----CC--UG-GAA-----
hsa-mir-599      CUUUUCACUGUUGUGUCAGUU-UAUCAAACCCAUACUUGGA-----U-G-------ACA-
CONS STRUCTURE   ...........)................................................

hsa-mir-130a     AGCGCU
hsa-mir-19b-1    AGUCUG
hsa-mir-19b-2    UGUGUG
hsa-mir-29b-1    --AGCU
hsa-mir-29b-2    --UUGC
hsa-mir-504      --UACC
hsa-mir-551a     ACCACA
hsa-mir-599      --GUCA
CONS STRUCTURE   ......



Consensus
CPU time: 0.00
Average sequence ID: 0.291326209931
Average free energy: 2.675
Average covariation: -0.316964285714
Average basepair probability: 0.259458675647
Canonical basepairs: NA

Sequence and structure consensus for Consensus
MUgaADVMACUGyCUKSCYRMAGYURGWUUYRcWRSWYUGCRYYSkRACAGHsURkWKYMHYWWUHRHWKGYAGYGCAMWUcYAUSHRAA AYYRRYDUUSAgwSSGBdGWRuGhdaAcMcASYRCM
..............................................(........................).................. ....................................

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
Table