Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
mir-135a-1       C-CCCAGGCC-UCGCUGU-UCUCUAUGGCUUUUU-AUUCCUAUGUGAUUCUACUGCUCAC
mir-150          C--UCCUCUC-CCCAUGG--CCCUGUCUCCCAAC-CCUUGUACCAGUGCUGGGCUCAGAC
mir-183          A-GUGUGACUCCUGUUCUGUG-UAUGG-CACUGGUAGAAUUCACUG-UGAACAGUCUCAG
mir-214          GGACAGAGUU-GUCAUGUGUCUGCCUGUCUACA--CUUGCUGUGCAGAACAUCCGCUCAC
mir-216a         C-GGAUGGCU-GUGAGUUGGCUUAAUCUCAGCUG-GCAACUGUGAGAUGUUCAUACAAUC
mir-592          G-AUGAUAUU-AUGCCAUGACAUUGUGUCAAUAU-GCGAUGAUGUGUUGUGAUGGCACAG
CONS STRUCTURE   ......................((((((((..............................

mir-135a-1       UCAUAUAGGGAUUGGAGCCGUGGCG-CACGGCGGGGACAGCCAG--CG
mir-150          CCUGGUACAGGCCUGGGGGACAGGG-ACCUGGGGACCCCGGCACCGGC
mir-183          UCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCC--A-
mir-214          CUGUACAGCAGGCACAGACAGGCAGUCACAUGACAACCCAGC-C--U-
mir-216a         CCUCACAGUGGUCUCUGGGAUUAUG-CUAAACAGAGCAAUUUCC--U-
mir-592          CGUCAUCACGU--GGUGACGCAACAUCAUGACGUAAGACGUCAC--AA
CONS STRUCTURE   ...............)))))))).........................



Consensus
CPU time: 0.00
Average sequence ID: 0.336532309661
Average free energy: -5.68833333333
Average covariation: 0.655208333333
Average basepair probability: 0.825285960646
Canonical basepairs: NA

Sequence and structure consensus for Consensus
SgRYVWKRYYcSYSMUGUGUCUYWRUSUCWMYWKuVYWAYURUSWGWUGYDMMBKCWCASYCWBAYARYGRYCKSWGRSRYRRMRWCACR RSRGARMMMGKYMCcgWV
......................((((((((.............................................))))))))....... ..................

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
Table