Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
mir-10a          AUCUGUCUGUCUUCUGUA--UAUACCCUGUAGAUCCGAAUUUGUGUAAGGA-AUUUUGUG
mir-10b          GUUGUAACGUUGUCUAUA--UAUACCCUGUAGAACCGAAUUUGUGUGGUAU--CCGUAUA
mir-125b-1       CAUUGUUGCGC-UCCUCUC-AGUCCCU-GAGACCCUAACUUGUGAUGUUUACCGUUUAAA
mir-125b-2       UCA-AACCAGACUUUUCC--UAG-UCCCUGAGACCCUAACUUGUGAGGUAUUUUAGUAAC
mir-145          GCUCC-CACC-UUGUCCUCACGGUCCA-GUUUUC-CCAGGAAUCCCUUAGAUGCUAAGAU
mir-584          UGACUUAGGGUGACCAGC--CAUUAUG-GUUUGCCUGGGACUGAGGAAUU-UGCUGGGAU
CONS STRUCTURE   .......((((..(((((...........((((((((((((((((...............

mir-10a          GUCACAAAUUCGUAUCUAG-GGGAAUAUGUAGUUGACAU-AAACAC
mir-10b          GUCACAGAUUCGAUUCUAG-GGGAAUAUAUGGUCGAUGCAAAAACU
mir-125b-1       UC-CACGGGUUAGGCUCUUGGGAGCUGCGAGUC-GUGCUUUUGCAU
mir-125b-2       AUCACAAGUCAGGCUCUUG-GGACCUAGGCGGAGGGGAACCAGCAG
mir-145          GGGGAUUCCUGG-AAAUACUGUUCUUGAGGUCAUGGUUUCACAGCU
mir-584          AUGUCAGUUCCAGGCCAACCAG-GCUGGUUGGUCUCCCUGAAGCAA
CONS STRUCTURE   ..)))))))))))))))).........)))))..))))........



Consensus
CPU time: 0.00
Average sequence ID: 0.31589023612
Average free energy: -20.025
Average covariation: 0.779666666667
Average basepair probability: 0.808760439629
Canonical basepairs: NA

Sequence and structure consensus for Consensus
KYWYKWMSSKYKUCYWYHcaYRKWCCCYGUWKACCYGARUUUKUGURDUDWYGYUKURWWRUSAMARRUYCRGRYCUWSBGGRVMURKGU GGWYGRBMUCAARCMU
.......((((..(((((...........((((((((((((((((.................)))))))))))))))).........))) ))..))))........

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
Table