Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
mir-128a         GGCCUUGUUCCUGAGCUGUUGGAUUCGGGGC--CGUAGCACUGUCUGAGAGGUUUA---C
mir-128b         GGCA--GCCACUGUGCAGUGGGAAGGGGGGCCGAUACACUGUACGAGA-GUGAGUAGCAG
mir-148a         CACGU-U--UG--GUCUUUUGAGGCAAAGUUCUG-AGACACUCCGACUCUGAGUAUGAUA
mir-148b         --CAC-GA-UU-AGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUC-UCUG
mir-152          GGCCC-GC-UG-UCCCCCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUC-UGGA
mir-431          GUC-CUGCU--UGUCCUGCGAGGUGUCUUGCAGGCCGUCAUGCAGGCCACACUGACGGUA
CONS STRUCTURE   ..............(.(((....((((((((((.....(((....((.............

mir-128a         AUUUCUCACAGUGAA-CCGGUCUCUUUUUCAGCUGCU-UCCUGGCUUC-
mir-128b         G--UCUCACAGUGA-ACCGGUCUCUUUCCCUACUGUGU--CACACUCCU
mir-148a         GA-AGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCU-GUGGUCGCCG
mir-148b         AA-AGUCAGUGCAU-CACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCU
mir-152          GC-AGUCAGUGCAU-GACAGAACUUGGGCCCGGAAGGA-CCUU-CUGCA
mir-431          ACGUUGC--AGGUCGUCUUGCAGGGCUUCUCGCAAG---ACGACAUCCU
CONS STRUCTURE   ....))..)))......))))))))))....))).).............



Consensus
CPU time: 0.00
Average sequence ID: 0.354919053549
Average free energy: -7.11333333333
Average covariation: 0.668421052632
Average basepair probability: 0.654679260921
Canonical basepairs: NA

Sequence and structure consensus for Consensus
GRCMYuGMYWSURKSCUKYKRGRUSARGKKCHGKKAKACACUCMGRSWVKGGYKHAKVWRRMkWSUCASWGYRHDAMCRGWMYYUKKYYY YRSWRGSWuMCKRRCUSCW
..............(.(((....((((((((((.....(((....((.................))..)))......))))))))))... .))).).............

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
Table