Results

You can download the results in the following formats: fasta clustal stockholm col
The consensus is based on:
CMfinder   FoldalignM   LaRA   MASTR   RNAalifold   RNAforester   RNASampler  


T-coffee consensus alignment

BAD AVG GOOD
hsa-mir-135a-1   CCCCA-GGCCUCGCUGUUCUCUAUGGCUUU---UUAUUCCUAUGUGAUUCUACUGCUCAC
hsa-mir-150      CUC----CUCUCCCCAUGG-CCCUGUCUCCCAACCCU-UGUACCAGUGCUGGGCUCAGAC
hsa-mir-183      AGUGUGACUCCUGUUCUGU---GUAUGGCACUGGUAGAAUUCACUGU-GAACAGUCUCAG
hsa-mir-214      GGA--CAGAGUUGUCAUGU-GUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCGCUCAC
CONS STRUCTURE   ..........(((((((..................(((((((((((..............

hsa-mir-135a-1   UCAUAUAGGGAU-UG--GAGCCGUGGCGCACGGCGGGGACAGCCAGC-G-
hsa-mir-150      CCUGGUACA-GGCCUGGGGGACAGGG-ACCUGGGGACCCC-GGCACCGGC
hsa-mir-183      UCAGUGAAUUAC-CGAAGGGCCAUAA-ACAGAGCAGAGAC--AGAUCCA-
hsa-mir-214      CUGUACAGCAGG-CACAGACAGGCAG-UCACAUGAC-AAC--CCAGCCU-
CONS STRUCTURE   .))))))))))).................)))))))..............



Consensus
CPU time: 0.00
Average sequence ID: 0.327613104524
Average free energy: -16.1125
Average covariation: 0.809027777778
Average basepair probability: 0.797549371925
Canonical basepairs: NA

Sequence and structure consensus for Consensus
MKHSWSRSWCUYGYYAUKUuSYMURUCUYWCWRYWMUWWYUAWSWRWDWHWWMYKCWCACYYWKWUARWDRKcYDVRGRGMCRURRcWCA YRKSRRVRACaGMCAKCSDc
..........(((((((..................(((((((((((...............))))))))))).................) ))))))..............

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
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