Results

You can download the results in the following formats: fasta clustal stockholm col
CMfinder
CPU time: 2.34
Average sequence ID: 0.355486862442
Average free energy: 18.99
Average covariation: 0.0614035087719
Average basepair probability: 0.339952413129
Canonical basepairs: NA

Sequence and structure consensus for CMfinder
MSYSDGRCHBMKYUKYUMUSUAUGKCHYUKUHWWMMWWYRCUKWKWMYARURYUCRGYUMAUAWAUWRAUVWRGRRCHRWRRSRCAGDGM MCWKRRAAAYCCAGCVYcggc
.........(.(.((((.(.(.(((..((...(..((..(..(.(.........)...)..)..))..)...))..))).)..).)))). .).).................

The alignment colored using colorrna.pl of the Vienna package

Cluster tree of the methods














Please send any comments or report bugs to Elfar Torarinsson or Stinus Lindgreen
Table