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MERGE_HEAD2COL

Section: User Commands (1)
Updated: September 2000
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NAME

merge_head2col - merge column data file together with headers.

 

SYNOPSIS

merge_head2col
[options] [file]

 

DESCRIPTION

merge_head2col merge column data file together with headers. containing miscellaneous information about each entry in column file as well as information about the entire column file. This script is designed to work on output generated from the program txt2col.

 

OPTIONS

getseqs accepts the following options.

-nseq <number>
Makes the blast search using nseq sequences at the time. Default is 25.

-dbhead <file>
The header file of the database.

-ehead <file>
The file containing header for each entry. Each entry is added to the corresponding data.

-help
-
prints this list.

 

EXAMPLES

To merge global header database header written in separate file foo.dbhead, entry header containg information each sequence written in separate file foo.ehead, together with the column file foo.col generated by txt2col.

merge_head2col -dbhead foo.dbhead -ehead foo.ehead foo.col

Directly from the text version (foo.txt) of the database:

txt2col foo.txt | merge_head2col -dbhead foo.dbhead -ehead

 

BUGS

Report bugs to col-bugs@bioinf.au.dk.

 

AUTHOR

Bjarne Knudsen (bk@daimi.au.dk)

 

SEE ALSO


 

Index

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXAMPLES
BUGS
AUTHOR
SEE ALSO


Comments, questions, etc., email gorodkin@genome.ku.dk.


Last updated March 26th, 2007 by Jan Gorodkin