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COLORPOS

Section: User Commands (1)
Updated: September 2000
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NAME

colorpos - color specifed positions.

 

SYNOPSIS

colorpos
[-rrange | -range=range] [-sseqrange | -seq=seqrange] [-c | --color | -Ccolor_r,color_g,color_b | --color=color_r,color_g,color_b] [-f | --fgcolor | -Fcolor_r,color_g,color_b | --fgcolor=color_r,color_g,color_b] [file]

 

DESCRIPTION

colorpos adds/modifies color columns to color specified positions. Input is either from file or stdin. The output is sent to stdout.

 

OPTIONS

colorpos accepts the following options. No color options are treated as -c.

-rrange
--range=range
Colors the positions specified in range. They are specified as numbers, seperated by commas.

-sseqrange
--seq=seqrange
Colors the sequences specified in seqrange. They are specified as numbers or entry names, seperated by commas.

-c
--color
Color colorpos symbols background green.

-f
--fgcolor
Color colorpos symbols foreground green.

-Ccolor_r,color_g,color_b
--color=color_r,color_g,color_b
Specifies the rgb background color. color_x are numbers between 0 and 1, setting the relevant color part.

-Fcolor_r,color_g,color_b
--fgcolor=color_r,color_g,color_b
Specifies the rgb foreground color. color_x are numbers between 0 and 1, setting the relevant color part.

 

EXAMPLES

Color positions 1 to 5 and 9 blue in sequences 3 to 5:

colorpos -r1-5,9 -s3-5 -C0,0,1 foo.col

 

BUGS

Report bugs to col-bugs@bioinf.au.dk.

 

AUTHOR

Bjarne Knudsen (bk@daimi.au.dk)

 

SEE ALSO


 

Index

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXAMPLES
BUGS
AUTHOR
SEE ALSO


Comments, questions, etc., email gorodkin@genome.ku.dk.


Last updated March 26th, 2007 by Jan Gorodkin