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ADDPAREN

Section: User Commands (1)
Updated: September 2000
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NAME

addparen - indicate RNA structure in col file

 

SYNOPSIS

addparen
[file]

 

DESCRIPTION

addparen adds a parenthesis sequence after each RNA sequence in a col file. The new sequence contains the RNA structure in parenthesis notation. Up to two different types of parentheses are used for pseudoknots. Input is either from file or stdin. The output is sent to stdout.

 

OPTIONS

addparen has no options.

 

EXAMPLES

Add parenthesis sequences to foo.col:

addparen foo.col

 

BUGS

Report bugs to col-bugs@bioinf.au.dk.

 

AUTHOR

Bjarne Knudsen (bk@daimi.au.dk)

 

SEE ALSO


 

Index

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXAMPLES
BUGS
AUTHOR
SEE ALSO


Comments, questions, etc., email gorodkin@genome.ku.dk.


Last updated March 26th, 2007 by Jan Gorodkin